To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("gaucho")

In most cases, you don't need to download the package archive at all.

gaucho

This is the development version of gaucho; for the stable release version, see gaucho.

Genetic Algorithms for Understanding Clonal Heterogeneity and Ordering

Bioconductor version: Development (3.0)

Use genetic algorithms to determine the relationship between clones in heterogenous populations such as cancer sequencing samples

Author: Alex Murison [aut, cre], Christopher Wardell [aut, cre]

Maintainer: Alex Murison <Alexander.Murison at icr.ac.uk>, Christopher Wardell <Christopher.Wardell at icr.ac.uk>

To install this package, start R and enter:

Citation (from within R, enter citation("gaucho")):

Installation

source("http://bioconductor.org/biocLite.R")
biocLite("gaucho")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gaucho")

 

PDF R Script An introduction to gaucho
PDF   Reference Manual
Text   NEWS

Details

biocViews Genetics, SNP, Sequencing, Software, SomaticMutation
Version 1.1.0
In Bioconductor since BioC 2.14 (R-3.1)
License GPL-3
Depends R (>= 3.0.0), compiler, GA, graph, heatmap.plus, png, Rgraphviz
Imports
Suggests knitr
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source gaucho_1.1.0.tar.gz
Windows Binary gaucho_1.1.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) gaucho_1.1.0.tgz
Mac OS X 10.9 (Mavericks) gaucho_1.1.0.tgz
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