cellHTS

Analysis of cell-based screens

Bioconductor version: Development (3.0)

Analysis of cell-based RNA interference screens

Author: Wolfgang Huber <huber at ebi.ac.uk>, Ligia Bras <ligia at ebi.ac.uk>, Michael Boutros <m.boutros at dkfz.de>

Maintainer: Ligia Bras <ligia at ebi.ac.uk>

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("cellHTS")

Citation (from within R, enter citation("cellHTS")):

Documentation

PDF R Script Main vignette: End-to-end analysis of cell-based screens
PDF R Script Supplement: multi-channel assays
PDF R Script Supplement: two-way assays
PDF   Reference Manual

Details

biocViews CellBasedAssays, Software, Visualization
Version 1.35.0
In Bioconductor since BioC 1.8 (R-2.3)
License Artistic-2.0
Depends R (>= 2.10), prada(>= 1.9.4), RColorBrewer, Biobase(>= 1.11.12), genefilter(>= 1.11.2)
Imports
Suggests Category, GO.db, vsn(>= 2.0.35)
System Requirements
URL http://www.dkfz.de/signaling http://www.ebi.ac.uk/huber
Depends On Me
Imports Me
Suggests Me prada

Package Downloads

Package Source cellHTS_1.35.0.tar.gz
Windows Binary cellHTS_1.35.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) cellHTS_1.35.0.tgz
Mac OS X 10.9 (Mavericks) cellHTS_1.35.0.tgz
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center