asmn

All sample mean normalization.

Bioconductor version: Development (3.0)

Performs all sample mean normalization using raw data output from BeadStudio and MethyLumiM data.

Author: 'Anna Decker <deckera at berkeley.edu> [aut,cre], Paul Yousefi <yousefi at berkeley.edu> [aut,cre]'

Maintainer: Anna Decker <deckera at berkeley.edu>

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("asmn")

Citation (from within R, enter citation("asmn")):

Documentation

PDF R Script Vignette for R package asmn
PDF   Reference Manual

Details

biocViews DNAMethylation, Preprocessing, QualityControl, Software, TwoChannel
Version 1.1.0
In Bioconductor since BioC 2.14 (R-3.1)
License GPL-3
Depends R (>= 3.0.2)
Imports methylumi, stats, Biobase
Suggests TCGAMethylation450k, IlluminaHumanMethylation450k.db
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source asmn_1.1.0.tar.gz
Windows Binary asmn_1.1.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) asmn_1.1.0.tgz
Mac OS X 10.9 (Mavericks) asmn_1.1.0.tgz
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