affyPara

Parallelized preprocessing methods for Affymetrix Oligonucleotide Arrays

Bioconductor version: Development (3.0)

The package contains parallelized functions for exploratory oligonucleotide array analysis. The package is designed for large numbers of microarray data.

Author: Markus Schmidberger <schmidb at ibe.med.uni-muenchen.de>, Esmeralda Vicedo <e.vicedo at gmx.net>, Ulrich Mansmann <mansmann at ibe.med.uni-muenchen.de>

Maintainer: Markus Schmidberger <MSchmidberger at freenet.de>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("affyPara")

To cite this package in a publication, start R and enter:

    citation("affyPara")

Documentation

PDF R Script Parallelized affy functions for preprocessing
PDF R Script Simulation Study for VSN Add-On Normalization and Subsample Size
PDF   Reference Manual
Text   README
Text   NEWS

Details

biocViews Microarray, Preprocessing, Software
Version 1.25.0
In Bioconductor since BioC 2.2 (R-2.7)
License GPL-3
Depends R (>= 2.5.0), methods, affy(>= 1.20.0), snow (>= 0.2-3), vsn(>= 3.6.0), aplpack (>= 1.1.1), affyio
Imports
Suggests affydata
System Requirements
URL http://www.ibe.med.uni-muenchen.de
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source affyPara_1.25.0.tar.gz
Windows Binary affyPara_1.25.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) affyPara_1.25.0.tgz
Mac OS X 10.9 (Mavericks)
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