XCIR

DOI: 10.18129/B9.bioc.XCIR    

This is the development version of XCIR; to use it, please install the devel version of Bioconductor.

XCI-inference

Bioconductor version: Development (3.10)

Models and tools for subject level analysis of X chromosome inactivation (XCI) and XCI-escape inference.

Author: Renan Sauteraud, Dajiang Liu

Maintainer: Renan Sauteraud <rxs575 at psu.edu>

Citation (from within R, enter citation("XCIR")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("XCIR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("XCIR")

 

HTML R Script Introduction to XCIR
PDF   Reference Manual
Text   NEWS

Details

biocViews Coverage, RNASeq, Sequencing, Software, StatisticalMethod
Version 0.99.6
In Bioconductor since BioC 3.10 (R-3.6)
License GPL-2
Depends methods
Imports stats, utils, data.table, IRanges, VariantAnnotation, seqminer, ggplot2, biomaRt, readxl, S4Vectors
LinkingTo
Suggests knitr, rmarkdown
SystemRequirements
Enhances
URL https://github.com/SRenan/XCIR
BugReports https://github.com/SRenan/XCIR/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package XCIR_0.99.6.tar.gz
Windows Binary XCIR_0.99.6.zip
Mac OS X 10.11 (El Capitan) XCIR_0.99.6.tgz
Source Repository git clone https://git.bioconductor.org/packages/XCIR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/XCIR
Package Short Url https://bioconductor.org/packages/XCIR/
Package Downloads Report Download Stats

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