To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("TarSeqQC")

In most cases, you don't need to download the package archive at all.

TarSeqQC

DOI: 10.18129/B9.bioc.TarSeqQC    

This is the development version of TarSeqQC; for the stable release version, see TarSeqQC.

TARgeted SEQuencing Experiment Quality Control

Bioconductor version: Development (3.6)

The package allows the representation of targeted experiment in R. This is based on current packages and incorporates functions to do a quality control over this kind of experiments and a fast exploration of the sequenced regions. An xlsx file is generated as output.

Author: Gabriela A. Merino, Cristobal Fresno, Yanina Murua, Andrea S. Llera and Elmer A. Fernandez

Maintainer: Gabriela Merino <gmerino at bdmg.com.ar>

Citation (from within R, enter citation("TarSeqQC")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("TarSeqQC")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TarSeqQC")

 

PDF R Script TarSeqQC: Targeted Sequencing Experiment Quality Control
PDF   Reference Manual
Text   NEWS

Details

biocViews Alignment, Coverage, DataImport, QualityControl, Sequencing, Software, TargetedResequencing, Visualization
Version 1.7.2
In Bioconductor since BioC 3.2 (R-3.2) (2 years)
License GPL (>=2)
Depends R (>= 3.4.1), methods, GenomicRanges, Rsamtools(>= 1.20.4), ggplot2, plyr, openxlsx
Imports grDevices, stats, utils, S4Vectors, IRanges, BiocGenerics, reshape2, GenomeInfoDb, BiocParallel, Biostrings, cowplot, graphics, GenomicAlignments, Hmisc
LinkingTo
Suggests RUnit
SystemRequirements
Enhances
URL http://www.bdmg.com.ar
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TarSeqQC_1.7.2.tar.gz
Windows Binary TarSeqQC_1.7.2.zip
Mac OS X 10.11 (El Capitan) TarSeqQC_1.7.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/TarSeqQC
Package Short Url http://bioconductor.org/packages/TarSeqQC/
Package Downloads Report Download Stats

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