DOI: 10.18129/B9.bioc.TarSeqQC    

This is the development version of TarSeqQC; for the stable release version, see TarSeqQC.

TARgeted SEQuencing Experiment Quality Control

Bioconductor version: Development (3.7)

The package allows the representation of targeted experiment in R. This is based on current packages and incorporates functions to do a quality control over this kind of experiments and a fast exploration of the sequenced regions. An xlsx file is generated as output.

Author: Gabriela A. Merino, Cristobal Fresno, Yanina Murua, Andrea S. Llera and Elmer A. Fernandez

Maintainer: Gabriela Merino <gmerino at bdmg.com.ar>

Citation (from within R, enter citation("TarSeqQC")):


To install this package, start R and enter:

## try http:// if https:// URLs are not supported


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script TarSeqQC: Targeted Sequencing Experiment Quality Control
PDF   Reference Manual
Text   NEWS


biocViews Alignment, Coverage, DataImport, QualityControl, Sequencing, Software, TargetedResequencing, Visualization
Version 1.9.1
In Bioconductor since BioC 3.2 (R-3.2) (2.5 years)
License GPL (>=2)
Depends R (>= 3.4.1), methods, GenomicRanges, Rsamtools(>= 1.20.4), ggplot2, plyr, openxlsx
Imports grDevices, stats, utils, S4Vectors, IRanges, BiocGenerics, reshape2, GenomeInfoDb, BiocParallel, Biostrings, cowplot, graphics, GenomicAlignments, Hmisc
Suggests RUnit
URL http://www.bdmg.com.ar
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TarSeqQC_1.9.1.tar.gz
Windows Binary TarSeqQC_1.9.1.zip
Mac OS X 10.11 (El Capitan) TarSeqQC_1.9.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/TarSeqQC
Package Short Url http://bioconductor.org/packages/TarSeqQC/
Package Downloads Report Download Stats

Documentation »


R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: