TSSi

Transcription Start Site Identification

Bioconductor version: Development (3.0)

Identify and normalize transcription start sites in high-throughput sequencing data.

Author: Clemens Kreutz, Julian Gehring

Maintainer: Julian Gehring <julian.gehring at embl.de>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("TSSi")

To cite this package in a publication, start R and enter:

    citation("TSSi")

Documentation

PDF R Script Introduction to the TSSi package: Identification of Transcription Start Sites
PDF   Reference Manual

Details

biocViews Genetics, Preprocessing, RNASeq, Sequencing, Software
Version 1.11.0
In Bioconductor since BioC 2.9 (R-2.14)
License GPL-3
Depends R (>= 2.13.2), BiocGenerics(>= 0.3.2)
Imports BiocGenerics, methods, Hmisc, minqa, stats, Biobase(>= 0.3.2), plyr, IRanges
Suggests rtracklayer
System Requirements
URL http://julian-gehring.github.com/TSSi/
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source TSSi_1.11.0.tar.gz
Windows Binary TSSi_1.11.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) TSSi_1.11.0.tgz
Mac OS X 10.9 (Mavericks)
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center