TDARACNE

Network reverse engineering from time course data.

Bioconductor version: Development (3.0)

To infer gene networks from time-series measurements is a current challenge into bioinformatics research area. In order to detect dependencies between genes at different time delays, we propose an approach to infer gene regulatory networks from time-series measurements starting from a well known algorithm based on information theory. The proposed algorithm is expected to be useful in reconstruction of small biological directed networks from time course data.

Author: Zoppoli P.,Morganella S., Ceccarelli M.

Maintainer: Zoppoli Pietro <zoppoli.pietro at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("TDARACNE")

To cite this package in a publication, start R and enter:

    citation("TDARACNE")

Documentation

PDF R Script TDARACNE
PDF   Reference Manual

Details

biocViews Microarray, Software, TimeCourse
Version 1.15.0
In Bioconductor since BioC 2.8 (R-2.13)
License GPL-2
Depends GenKern, Rgraphviz, Biobase
Imports
Suggests
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source TDARACNE_1.15.0.tar.gz
Windows Binary TDARACNE_1.15.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) TDARACNE_1.15.0.tgz
Mac OS X 10.9 (Mavericks)
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center