To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("TCGAbiolinksGUI")

In most cases, you don't need to download the package archive at all.

TCGAbiolinksGUI

DOI: 10.18129/B9.bioc.TCGAbiolinksGUI    

This is the development version of TCGAbiolinksGUI; for the stable release version, see TCGAbiolinksGUI.

"TCGAbiolinksGUI: A Graphical User Interface to analyze cancer molecular and clinical data"

Bioconductor version: Development (3.6)

"TCGAbiolinksGUI: A Graphical User Interface to analyze cancer molecular and clinical data. A demo version of GUI is found in https://tcgabiolinksgui.shinyapps.io/tcgabiolinks/"

Author: Tiago Chedraoui Silva <tiagochst at gmail.com>, Antonio Colaprico <antonio.colaprico at ulb.ac.be>, Catharina Olsen <colsen at ulb.ac.be>, Michele Ceccarelli, Gianluca Bontempi <gbonte at ulb.ac.be>, Benjamin P. Berman <Benjamin.Berman at cshs.org>, Houtan Noushmehr <houtana at gmail.com>

Maintainer: Tiago C. Silva <tiagochst at gmail.com>

Citation (from within R, enter citation("TCGAbiolinksGUI")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("TCGAbiolinksGUI")

Documentation

HTML R Script 1. Introduction
HTML R Script 2. Data menu
HTML 3. Analysis menu
HTML 4. Integratice analysis menu
HTML 5. Cases study
HTML R Script TCGAbiolinksGUI User's Guide
PDF   Reference Manual
Text   NEWS

Details

biocViews DNAMethylation, DNASeq, DifferentialExpression, DifferentialMethylation, GUI, GeneExpression, GeneRegulation, Genetics, MethylationArray, Network, Pathways, Sequencing, Software, StatisticalMethod
Version 1.3.3
In Bioconductor since BioC 3.5 (R-3.4) (< 6 months)
License GPL (>= 3)
Depends R (>= 3.3.1), shinydashboard (>= 0.5.3)
Imports shiny (>= 0.14.1), downloader (>= 0.4), grid, DT, plotly, readr, maftools, stringr (>= 1.1.0), SummarizedExperiment, ggrepel, data.table, shinyFiles (>= 0.6.2), ggplot2 (>= 2.1.0), pathview, ELMER(>= 2.0.0), clusterProfiler, parallel, TCGAbiolinks(>= 2.5.5), shinyjs (>= 0.7), colourpicker, shinyBS (>= 0.61)
LinkingTo
Suggests testthat, dplyr, knitr, roxygen2, devtools, rvest, xml2, BiocStyle, animation, pander
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source TCGAbiolinksGUI_1.3.3.tar.gz
Windows Binary TCGAbiolinksGUI_1.3.3.zip
Mac OS X 10.11 (El Capitan) TCGAbiolinksGUI_1.3.3.tgz
Source Repository git clone https://git.bioconductor.org/packages/TCGAbiolinksGUI
Package Short Url http://bioconductor.org/packages/TCGAbiolinksGUI/
Package Downloads Report Download Stats

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