Sushi

DOI: 10.18129/B9.bioc.Sushi    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This is the development version of Sushi; for the stable release version, see Sushi.

Tools for visualizing genomics data

Bioconductor version: Development (3.15)

Flexible, quantitative, and integrative genomic visualizations for publication-quality multi-panel figures

Author: Douglas H Phanstiel <dphansti at stanford.edu>

Maintainer: Douglas H Phanstiel <dphansti at stanford.edu>

Citation (from within R, enter citation("Sushi")):

Installation

To install this package, start R (version "4.2") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("Sushi")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews DataRepresentation, Genetics, HiC, Infrastructure, Sequencing, Software, Visualization
Version 1.33.1
In Bioconductor since BioC 2.14 (R-3.1) (7.5 years)
License GPL (>= 2)
Depends R (>= 2.10), zoo, biomaRt
Imports graphics, grDevices
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me ChromSCape, diffloop, Ularcirc, VaSP
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/Sushi
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Sushi
Package Short Url https://bioconductor.org/packages/Sushi/
Package Downloads Report Download Stats

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