To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("SWATH2stats")

In most cases, you don't need to download the package archive at all.

SWATH2stats

DOI: 10.18129/B9.bioc.SWATH2stats    

This is the development version of SWATH2stats; for the stable release version, see SWATH2stats.

Transform and Filter SWATH Data for Statistical Packages

Bioconductor version: Development (3.7)

This package is intended to transform SWATH data from the OpenSWATH software into a format readable by other statistics packages while performing filtering, annotation and FDR estimation.

Author: Peter Blattmann, Moritz Heusel and Ruedi Aebersold

Maintainer: Peter Blattmann <blattmann at imsb.biol.ethz.ch>

Citation (from within R, enter citation("SWATH2stats")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("SWATH2stats")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SWATH2stats")

 

PDF R Script SWATH2stats example script
PDF R Script SWATH2stats package Vignette
PDF   Reference Manual
Text   NEWS

Details

biocViews Annotation, ExperimentalDesign, MassSpectrometry, Preprocessing, Proteomics, Software
Version 1.9.1
In Bioconductor since BioC 3.2 (R-3.2) (2 years)
License GPL-3
Depends R (>= 2.10.0)
Imports data.table, reshape2, grid, ggplot2, stats, grDevices, graphics, utils
LinkingTo
Suggests testthat, aLFQ, knitr, PECA
SystemRequirements
Enhances imsbInfer, MSstats
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SWATH2stats_1.9.1.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/SWATH2stats
Package Short Url http://bioconductor.org/packages/SWATH2stats/
Package Downloads Report Download Stats

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