DOI: 10.18129/B9.bioc.SNPchip    

This is the development version of SNPchip; for the stable release version, see SNPchip.

Visualizations for copy number alterations

Bioconductor version: Development (3.7)

Functions for plotting SNP array data; maintained for historical reasons

Author: Robert Scharpf <rscharpf at> and Ingo Ruczinski

Maintainer: Robert Scharpf <rscharpf at>

Citation (from within R, enter citation("SNPchip")):


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PDF R Script Plotting Idiograms
PDF   Reference Manual


biocViews CopyNumberVariation, GeneticVariability, SNP, Software, Visualization
Version 2.25.0
In Bioconductor since BioC 2.0 (R-2.5) (11 years)
License LGPL (>= 2)
Depends R (>= 2.14.0)
Imports methods, graphics, lattice, grid, foreach, utils, Biobase, S4Vectors(>= 0.9.25), IRanges, GenomeInfoDb, GenomicRanges, SummarizedExperiment, oligoClasses(>= 1.31.1)
Suggests crlmm(>= 1.17.14), RUnit
Enhances doSNOW, VanillaICE(>= 1.21.24), RColorBrewer
Depends On Me mBPCR
Imports Me crlmm, phenoTest
Suggests Me Category, MinimumDistance, oligoClasses, VanillaICE
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Source Package SNPchip_2.25.0.tar.gz
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