Rolexa

Statistical analysis of Solexa sequencing data

Bioconductor version: Development (3.0)

Provides probabilistic base calling, quality checks and diagnostic plots for Solexa sequencing data

Author: Jacques Rougemont, Arnaud Amzallag, Christian Iseli, Laurent Farinelli, Ioannis Xenarios, Felix Naef

Maintainer: Jacques Rougemont <jacques.rougemont at epfl.ch>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("Rolexa")

To cite this package in a publication, start R and enter:

    citation("Rolexa")

Documentation

PDF R Script Rolexa
PDF   Reference Manual

Details

biocViews DataImport, Preprocessing, QualityControl, Sequencing, Software
Version 1.21.0
In Bioconductor since BioC 2.5 (R-2.10)
License GPL-2
Depends R (>= 2.9.0), graphics, grDevices, methods, ShortRead
Imports mclust, Biostrings, graphics, grDevices, IRanges, methods, ShortRead, stats
Suggests
System Requirements
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Package Downloads

Package Source Rolexa_1.21.0.tar.gz
Windows Binary Rolexa_1.21.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) Rolexa_1.21.0.tgz
Mac OS X 10.9 (Mavericks)
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