ReactomeContentService4R

DOI: 10.18129/B9.bioc.ReactomeContentService4R    

This is the development version of ReactomeContentService4R; for the stable release version, see ReactomeContentService4R.

Interface for the Reactome Content Service

Bioconductor version: Development (3.14)

Reactome is a free, open-source, open access, curated and peer-reviewed knowledgebase of bio-molecular pathways. This package is to interact with the Reactome Content Service API. Pre-built functions would allow users to retrieve data and images that consist of proteins, pathways, and other molecules related to a specific gene or entity in Reactome.

Author: Chi-Lam Poon [aut, cre] , Reactome [cph]

Maintainer: Chi-Lam Poon <clpoon807 at gmail.com>

Citation (from within R, enter citation("ReactomeContentService4R")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ReactomeContentService4R")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ReactomeContentService4R")

 

HTML R Script ReactomeContentService4R
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews DataImport, Pathways, Reactome, Software
Version 1.1.0
In Bioconductor since BioC 3.13 (R-4.1) (< 6 months)
License Apache License (>= 2.0) | file LICENSE
Depends
Imports httr, jsonlite, utils, magick (>= 2.5.1), data.table, doParallel, foreach, parallel
LinkingTo
Suggests pdftools, testthat, knitr, rmarkdown
SystemRequirements
Enhances
URL https://github.com/reactome/ReactomeContentService4R
BugReports https://github.com/reactome/ReactomeContentService4R/issues
Depends On Me
Imports Me ReactomeGraph4R
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ReactomeContentService4R_1.1.0.tar.gz
Windows Binary ReactomeContentService4R_1.1.0.zip
macOS 10.13 (High Sierra) ReactomeContentService4R_1.1.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ReactomeContentService4R
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ReactomeContentService4R
Package Short Url https://bioconductor.org/packages/ReactomeContentService4R/
Package Downloads Report Download Stats

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