To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ReQON")

In most cases, you don't need to download the package archive at all.

ReQON

 

   

This is the development version of ReQON; for the stable release version, see ReQON.

Recalibrating Quality Of Nucleotides

Bioconductor version: Development (3.5)

Algorithm for recalibrating the base quality scores for aligned sequencing data in BAM format.

Author: Christopher Cabanski, Keary Cavin, Chris Bizon

Maintainer: Christopher Cabanski <cabanskc at gmail.com>

Citation (from within R, enter citation("ReQON")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ReQON")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ReQON")

 

PDF R Script ReQON Tutorial
PDF   Reference Manual
Text   NEWS

Details

biocViews HighThroughputSequencing, Preprocessing, QualityControl, Sequencing, Software
Version 1.21.0
In Bioconductor since BioC 2.9 (R-2.14) (5 years)
License GPL-2
Depends R (>= 3.0.2), Rsamtools, seqbias
Imports rJava, graphics, stats, utils, grDevices
LinkingTo
Suggests BiocStyle
SystemRequirements Java version >= 1.6
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source ReQON_1.21.0.tar.gz
Windows Binary ReQON_1.21.0.zip
Mac OS X 10.9 (Mavericks) ReQON_1.21.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/ReQON
Package Short Url http://bioconductor.org/packages/ReQON/
Package Downloads Report Download Stats

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