DOI: 10.18129/B9.bioc.RchyOptimyx    

This is the development version of RchyOptimyx; for the stable release version, see RchyOptimyx.

Optimyzed Cellular Hierarchies for Flow Cytometry

Bioconductor version: Development (3.9)

Constructs a hierarchy of cells using flow cytometry for maximization of an external variable (e.g., a clinical outcome or a cytokine response).

Author: Adrin Jalali, Nima Aghaeepour

Maintainer: Adrin Jalali <adrin.jalali at gmail.com>, Nima Aghaeepour <naghaeep at gmail.com>

Citation (from within R, enter citation("RchyOptimyx")):


To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
BiocManager::install("RchyOptimyx", version = "3.9")

For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script flowType package
PDF   Reference Manual
Text   NEWS


biocViews FlowCytometry, Software
Version 2.23.0
In Bioconductor since BioC 2.10 (R-2.15) (7 years)
License Artistic-2.0
Depends R (>= 2.10)
Imports Rgraphviz, sfsmisc, graphics, methods, graph, grDevices, flowType(>= 2.0.0)
Suggests flowCore
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RchyOptimyx_2.23.0.tar.gz
Windows Binary RchyOptimyx_2.23.0.zip
Mac OS X 10.11 (El Capitan) RchyOptimyx_2.23.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/RchyOptimyx
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RchyOptimyx
Package Short Url http://bioconductor.org/packages/RchyOptimyx/
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