RamiGO

AmiGO visualize R interface

Bioconductor version: Development (3.0)

R interface sending requests to AmiGO visualize, retrieving DAG GO trees, parsing GraphViz DOT format files and exporting GML files for Cytoscape. Also uses RCytoscape to interactively display AmiGO trees in Cytoscape.

Author: Markus Schroeder, Daniel Gusenleitner, John Quackenbush, Aedin Culhane, Benjamin Haibe-Kains

Maintainer: Markus Schroeder <mschroed at jimmy.harvard.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("RamiGO")

To cite this package in a publication, start R and enter:

    citation("RamiGO")

Documentation

PDF R Script RamiGO: An Introduction (HowTo)
PDF   Reference Manual
Text   NEWS

Details

biocViews Classification, GO, GraphAndNetwork, Software, ThirdPartyClient, Visualization
Version 1.11.0
In Bioconductor since BioC 2.9 (R-2.14)
License Artistic-2.0
Depends gsubfn, methods
Imports igraph, RCurl, png, RCytoscape, graph
Suggests
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source RamiGO_1.11.0.tar.gz
Windows Binary RamiGO_1.11.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) RamiGO_1.11.0.tgz
Mac OS X 10.9 (Mavericks)
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