To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RNAprobR")

In most cases, you don't need to download the package archive at all.

RNAprobR

DOI: 10.18129/B9.bioc.RNAprobR    

This is the development version of RNAprobR; for the stable release version, see RNAprobR.

An R package for analysis of massive parallel sequencing based RNA structure probing data

Bioconductor version: Development (3.7)

This package facilitates analysis of Next Generation Sequencing data for which positional information with a single nucleotide resolution is a key. It allows for applying different types of relevant normalizations, data visualization and export in a table or UCSC compatible bedgraph file.

Author: Lukasz Jan Kielpinski [aut], Nikos Sidiropoulos [cre, aut], Jeppe Vinther [aut]

Maintainer: Nikos Sidiropoulos <nikos.sidiro at gmail.com>

Citation (from within R, enter citation("RNAprobR")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RNAprobR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RNAprobR")

 

PDF R Script RNAprobR: An R package for analysis of the massive parallel sequencing based methods of RNA structure probing
PDF   Reference Manual
Text   NEWS

Details

biocViews Coverage, GenomeAnnotation, Normalization, Sequencing, Software
Version 1.11.0
In Bioconductor since BioC 3.1 (R-3.2) (2.5 years)
License GPL (>=2)
Depends R (>= 3.1.1), GenomicFeatures(>= 1.16.3), plyr (>= 1.8.1), BiocGenerics(>= 0.10.0)
Imports Biostrings(>= 2.32.1), GenomicRanges(>= 1.16.4), IRanges(>= 2.10.5), Rsamtools(>= 1.16.1), rtracklayer(>= 1.24.2), GenomicAlignments(>= 1.5.12), S4Vectors(>= 0.14.7), graphics, stats, utils
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RNAprobR_1.11.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) RNAprobR_1.11.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/RNAprobR
Package Short Url http://bioconductor.org/packages/RNAprobR/
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