To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("PGSEA")

In most cases, you don't need to download the package archive at all.

PGSEA

This is the development version of PGSEA; for the stable release version, see PGSEA.

Parametric Gene Set Enrichment Analysis

Bioconductor version: Development (3.0)

Parametric Analysis of Gene Set Enrichment

Author: Kyle Furge <kyle.furge at vai.org> and Karl Dykema <karl.dykema at vai.org>

Maintainer: Karl Dykema <karl.dykema at vai.org>

To install this package, start R and enter:

Citation (from within R, enter citation("PGSEA")):

Installation

source("http://bioconductor.org/biocLite.R")
biocLite("PGSEA")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PGSEA")

 

PDF R Script HOWTO: PGSEA
PDF R Script HOWTO: PGSEA Example Workflow
PDF   Reference Manual

Details

biocViews Microarray, Software
Version 1.39.0
In Bioconductor since BioC 2.0 (R-2.5)
License GPL-2
Depends R (>= 2.10), GO.db, KEGG.db, AnnotationDbi, annaffy, methods, Biobase(>= 2.5.5)
Imports
Suggests GSEABase, GEOquery, org.Hs.eg.db, hgu95av2.db, limma
System Requirements
URL
Depends On Me GeneExpressionSignature
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source PGSEA_1.39.0.tar.gz
Windows Binary PGSEA_1.39.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) PGSEA_1.39.0.tgz
Mac OS X 10.9 (Mavericks) PGSEA_1.39.0.tgz
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