To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("OmicsMarkeR")

In most cases, you don't need to download the package archive at all.

OmicsMarkeR

DOI: 10.18129/B9.bioc.OmicsMarkeR    

This is the development version of OmicsMarkeR; for the stable release version, see OmicsMarkeR.

Classification and Feature Selection for 'Omics' Datasets

Bioconductor version: Development (3.7)

Tools for classification and feature selection for 'omics' level datasets. It is a tool to provide multiple multivariate classification and feature selection techniques complete with multiple stability metrics and aggregation techniques. It is primarily designed for analysis of metabolomics datasets but potentially extendable to proteomics and transcriptomics applications.

Author: Charles E. Determan Jr. <cdetermanjr at gmail.com>

Maintainer: Charles E. Determan Jr. <cdetermanjr at gmail.com>

Citation (from within R, enter citation("OmicsMarkeR")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("OmicsMarkeR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("OmicsMarkeR")

 

PDF R Script A Short Introduction to the OmicMarkeR Package
PDF   Reference Manual
Text   NEWS

Details

biocViews Classification, FeatureExtraction, Metabolomics, Software
Version 1.11.0
In Bioconductor since BioC 3.1 (R-3.2) (2.5 years)
License GPL-3
Depends R (>= 3.2.0)
Imports graphics, stats, utils, plyr (>= 1.8), data.table (>= 1.9.4), caret (>= 6.0-37), DiscriMiner (>= 0.1-29), e1071 (>= 1.6-1), randomForest (>= 4.6-10), gbm (>= 2.1), pamr (>= 1.54.1), glmnet (>= 1.9-5), caTools (>= 1.14), foreach (>= 1.4.1), permute (>= 0.7-0), assertive (>= 0.3-0), assertive.base (>= 0.0-1)
LinkingTo
Suggests testthat, BiocStyle, knitr
SystemRequirements
Enhances
URL http://github.com/cdeterman/OmicsMarkeR
BugReports http://github.com/cdeterman/OmicsMarkeR/issues/new
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package OmicsMarkeR_1.11.0.tar.gz
Windows Binary OmicsMarkeR_1.11.0.zip
Mac OS X 10.11 (El Capitan) OmicsMarkeR_1.11.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/OmicsMarkeR
Package Short Url http://bioconductor.org/packages/OmicsMarkeR/
Package Downloads Report Download Stats

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