MobilityTransformR

DOI: 10.18129/B9.bioc.MobilityTransformR    

This is the development version of MobilityTransformR; for the stable release version, see MobilityTransformR.

Effective mobility scale transformation of CE-MS(/MS) data

Bioconductor version: Development (3.16)

MobilityTransformR collects a tool set for effective mobility scale transformation of CE-MS/MS data in order to increase reproducibility. It provides functionality to determine the migration times from mobility markers that have been added to the analysis and performs the transformation based on these markers. MobilityTransformR supports the conversion of numeric vectors, Spectra-objects, and MSnOnDiskExp.

Author: Liesa Salzer [cre, aut]

Maintainer: Liesa Salzer <liesa.salzer at helmholtz-muenchen.de>

Citation (from within R, enter citation("MobilityTransformR")):

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MobilityTransformR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MobilityTransformR")

 

HTML R Script Description and usage of MobilityTransformR
PDF   Reference Manual
Text   NEWS

Details

biocViews Infrastructure, MassSpectrometry, Metabolomics, Preprocessing, Proteomics, Software
Version 1.1.0
In Bioconductor since BioC 3.15 (R-4.2) (< 6 months)
License Artistic-2.0
Depends MSnbase, R (>= 4.2)
Imports xcms, MetaboCoreUtils, Spectra
LinkingTo
Suggests testthat, msdata(>= 0.35.3), knitr (>= 1.1.0), roxygen2, BiocStyle(>= 2.5.19), rmarkdown
SystemRequirements
Enhances
URL https://github.com/LiesaSalzer/MobilityTransformR
BugReports https://github.com/LiesaSalzer/MobilityTransformR/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MobilityTransformR_1.1.0.tar.gz
Windows Binary MobilityTransformR_1.1.0.zip
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/MobilityTransformR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MobilityTransformR
Package Short Url https://bioconductor.org/packages/MobilityTransformR/
Package Downloads Report Download Stats

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