To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Metab")

In most cases, you don't need to download the package archive at all.

Metab

DOI: 10.18129/B9.bioc.Metab    

This is the development version of Metab; for the stable release version, see Metab.

Metab: An R Package for a High-Throughput Analysis of Metabolomics Data Generated by GC-MS.

Bioconductor version: Development (3.7)

Metab is an R package for high-throughput processing of metabolomics data analysed by the Automated Mass Spectral Deconvolution and Identification System (AMDIS) (http://chemdata.nist.gov/mass-spc/amdis/downloads/). In addition, it performs statistical hypothesis test (t-test) and analysis of variance (ANOVA). Doing so, Metab considerably speed up the data mining process in metabolomics and produces better quality results. Metab was developed using interactive features, allowing users with lack of R knowledge to appreciate its functionalities.

Author: Raphael Aggio <ragg005 at aucklanduni.ac.nz>

Maintainer: Raphael Aggio <ragg005 at aucklanduni.ac.nz>

Citation (from within R, enter citation("Metab")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Metab")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Metab")

 

PDF R Script Applying Metab
PDF   Reference Manual
Text   NEWS

Details

biocViews AMDIS, GCMS, MassSpectrometry, Metabolomics, Software
Version 1.13.0
In Bioconductor since BioC 3.0 (R-3.1) (3 years)
License GPL (>=2)
Depends xcms, R (>= 3.0.1), svDialogs
Imports pander
LinkingTo
Suggests RUnit, BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Metab_1.13.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) Metab_1.13.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Metab
Package Short Url http://bioconductor.org/packages/Metab/
Package Downloads Report Download Stats

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