To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MSGFplus")

In most cases, you don't need to download the package archive at all.

MSGFplus

DOI: 10.18129/B9.bioc.MSGFplus    

This is the development version of MSGFplus; for the stable release version, see MSGFplus.

An interface between R and MS-GF+

Bioconductor version: Development (3.6)

This package contains function to perform peptide identification using the MS-GF+ algorithm. The package contains functionality for building up a parameter set both in code and through a simple GUI, as well as running the algorithm in batches, potentially asynchronously.

Author: Thomas Lin Pedersen

Maintainer: Thomas Lin Pedersen <thomasp85 at gmail.com>

Citation (from within R, enter citation("MSGFplus")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MSGFplus")

Documentation

HTML R Script Using MSGFgui
PDF   Reference Manual
Text   NEWS

Details

biocViews MassSpectrometry, Proteomics, Software
Version 1.11.1
In Bioconductor since BioC 3.0 (R-3.1) (3 years)
License GPL (>= 2)
Depends methods
Imports mzID, ProtGenerics
LinkingTo
Suggests gWidgets, knitr, testthat
SystemRequirements Java (>= 1.7)
Enhances
URL
Depends On Me
Imports Me MSGFgui
Suggests Me RforProteomics
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MSGFplus_1.11.1.tar.gz
Windows Binary MSGFplus_1.11.1.zip
Mac OS X 10.11 (El Capitan) MSGFplus_1.11.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/MSGFplus
Package Short Url http://bioconductor.org/packages/MSGFplus/
Package Downloads Report Download Stats

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