DOI: 10.18129/B9.bioc.MSGFplus    

This is the development version of MSGFplus; for the stable release version, see MSGFplus.

An interface between R and MS-GF+

Bioconductor version: Development (3.7)

This package contains function to perform peptide identification using the MS-GF+ algorithm. The package contains functionality for building up a parameter set both in code and through a simple GUI, as well as running the algorithm in batches, potentially asynchronously.

Author: Thomas Lin Pedersen

Maintainer: Thomas Lin Pedersen <thomasp85 at>

Citation (from within R, enter citation("MSGFplus")):


To install this package, start R and enter:

## try http:// if https:// URLs are not supported


HTML R Script Using MSGFgui
PDF   Reference Manual
Text   NEWS


biocViews MassSpectrometry, Proteomics, Software
Version 1.13.0
In Bioconductor since BioC 3.0 (R-3.1) (3.5 years)
License GPL (>= 2)
Depends methods
Imports mzID, ProtGenerics
Suggests gWidgets, knitr, testthat
SystemRequirements Java (>= 1.7)
Depends On Me proteomics
Imports Me MSGFgui
Suggests Me RforProteomics
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MSGFplus_1.13.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) MSGFplus_1.13.0.tgz
Source Repository git clone
Package Short Url
Package Downloads Report Download Stats

Documentation »


R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: