DOI: 10.18129/B9.bioc.LowMACA    

This is the development version of LowMACA; for the stable release version, see LowMACA.

LowMACA - Low frequency Mutation Analysis via Consensus Alignment

Bioconductor version: Development (3.7)

The LowMACA package is a simple suite of tools to investigate and analyze the mutation profile of several proteins or pfam domains via consensus alignment. You can conduct an hypothesis driven exploratory analysis using our package simply providing a set of genes or pfam domains of your interest.

Author: Stefano de Pretis , Giorgio Melloni

Maintainer: Stefano de Pretis <ste.depo at gmail.com>, Giorgio Melloni <melloni.giorgio at gmail.com>

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PDF R Script LowMACA
PDF   Reference Manual
Text   NEWS


biocViews Alignment, DataImport, MultipleSequenceAlignment, SequenceMatching, Sequencing, Software, SomaticMutation, WholeGenome
Version 1.11.0
In Bioconductor since BioC 3.1 (R-3.2) (3 years)
License GPL-3
Depends R (>= 2.10)
Imports cgdsr, parallel, stringr, reshape2, data.table, RColorBrewer, methods, LowMACAAnnotation, BiocParallel, motifStack, Biostrings
Suggests BiocStyle, knitr, rmarkdown
SystemRequirements clustalo, gs, perl
Depends On Me
Imports Me
Suggests Me
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Source Package LowMACA_1.11.0.tar.gz
Windows Binary LowMACA_1.11.0.zip
Mac OS X 10.11 (El Capitan) LowMACA_1.11.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/LowMACA
Package Short Url http://bioconductor.org/packages/LowMACA/
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