DOI: 10.18129/B9.bioc.ImmuneSpaceR    

This is the development version of ImmuneSpaceR; for the stable release version, see ImmuneSpaceR.

A Thin Wrapper around the ImmuneSpace Database

Bioconductor version: Development (3.15)

Provides a convenient API for accessing data sets within ImmuneSpace (, the data repository and analysis platform of the Human Immunology Project Consortium (HIPC).

Author: Greg Finak [aut], Renan Sauteraud [aut], Mike Jiang [aut], Gil Guday [aut], Leo Dashevskiy [aut], Evan Henrich [aut], Ju Yeong Kim [aut], Lauren Wolfe [aut], Helen Miller [aut], Raphael Gottardo [aut], ImmuneSpace Package Maintainer [cre, cph]

Maintainer: ImmuneSpace Package Maintainer <immunespace at>

Citation (from within R, enter citation("ImmuneSpaceR")):


To install this package, start R (version "4.2") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script An Introduction to the ImmuneSpaceR Package
HTML R Script Downloading Datasets with getDataset
HTML R Script Handling Expression Matrices with ImmuneSpaceR
HTML R Script interactive_netrc() Function Walkthrough
HTML R Script SDY144: Correlation of HAI/Virus Neutralizition Titer and Cell Counts
HTML R Script SDY180: Abundance of Plasmablasts Measured by Multiparameter Flow Cytometry
HTML R Script SDY269: Correlating HAI with Flow Cytometry and ELISPOT Results
PDF   Reference Manual
Text   NEWS


biocViews DataImport, DataRepresentation, Software, ThirdPartyClient
Version 1.23.0
In Bioconductor since BioC 3.3 (R-3.3) (5.5 years)
License GPL-2
Depends R (>= 3.5.0)
Imports utils, R6, data.table, curl, httr, Rlabkey (>= 2.3.1), Biobase, pheatmap, ggplot2 (>= 3.2.0), scales, stats, gplots, plotly, heatmaply (>= 0.7.0), jsonlite, rmarkdown, preprocessCore, flowCore, flowWorkspace, digest
Suggests knitr, testthat
Depends On Me
Imports Me
Suggests Me
Links To Me
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Source Package ImmuneSpaceR_1.23.0.tar.gz
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