To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("IPPD")

In most cases, you don't need to download the package archive at all.

IPPD

This is the development version of IPPD; for the stable release version, see IPPD.

Isotopic peak pattern deconvolution for Protein Mass Spectrometry by template matching

Bioconductor version: Development (3.0)

The package provides functionality to extract isotopic peak patterns from raw mass spectra. This is done by fitting a large set of template basis functions to the raw spectrum using either nonnegative least squares or least absolute deviation fittting. The package offers a flexible function which tries to estimate model parameters in a way tailored to the peak shapes in the data. The package also provides functionality to process LCMS runs.

Author: Martin Slawski <ms at cs.uni-saarland.de>, Rene Hussong <rene.hussong at uni.lu>, Matthias Hein <hein at cs.uni-saarland.de>

Maintainer: Martin Slawski <ms at cs.uni-saarland.de>

Citation (from within R, enter citation("IPPD")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("IPPD")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("IPPD")

 

PDF R Script IPPD Manual
PDF   Reference Manual

Details

biocViews Proteomics, Software
Version 1.13.0
In Bioconductor since BioC 2.8 (R-2.13)
License GPL (version 2 or later)
Depends R (>= 2.12.0), MASS, Matrix, XML, digest, bitops
Imports methods, stats, graphics
Suggests
System Requirements
URL
Depends On Me
Imports Me
Suggests Me RforProteomics

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source IPPD_1.13.0.tar.gz
Windows Binary IPPD_1.13.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) IPPD_1.13.0.tgz
Mac OS X 10.9 (Mavericks) IPPD_1.13.0.tgz
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