GenRank

DOI: 10.18129/B9.bioc.GenRank    

This is the development version of GenRank; for the stable release version, see GenRank.

Candidate gene prioritization based on convergent evidence

Bioconductor version: Development (3.12)

Methods for ranking genes based on convergent evidence obtained from multiple independent evidence layers. This package adapts three methods that are popular for meta-analysis.

Author: Chakravarthi Kanduri

Maintainer: Chakravarthi Kanduri <chakra.kanduri at gmail.com>

Citation (from within R, enter citation("GenRank")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("GenRank")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews CopyNumberVariation, GeneExpression, Genetics, Microarray, SNP, Sequencing, Software
Version 1.17.0
In Bioconductor since BioC 3.3 (R-3.3) (4 years)
License Artistic-2.0
Depends R (>= 3.2.3)
Imports matrixStats, reshape2, survcomp
LinkingTo
Suggests knitr, rmarkdown, testthat
SystemRequirements
Enhances
URL https://github.com/chakri9/GenRank
BugReports https://github.com/chakri9/GenRank/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/GenRank
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GenRank
Package Short Url https://bioconductor.org/packages/GenRank/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: