GOSim
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This is the development version of GOSim; for the stable release version, see GOSim.
Computation of functional similarities between GO terms and gene products; GO enrichment analysis
Bioconductor version: Development (3.19)
This package implements several functions useful for computing similarities between GO terms and gene products based on their GO annotation. Moreover it allows for computing a GO enrichment analysis
Author: Holger Froehlich <frohlich at bit.uni-bonn.de>
Maintainer: Holger Froehlich <frohlich at bit.uni-bonn.de>
citation("GOSim")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("GOSim")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | Clustering, GO, Pathways, Software |
| Version | 1.41.1 |
| In Bioconductor since | BioC 2.13 (R-3.0) (10.5 years) |
| License | GPL (>= 2) |
| Depends | GO.db, annotate |
| Imports | org.Hs.eg.db, AnnotationDbi, topGO, cluster, flexmix, RBGL, graph, Matrix, corpcor, Rcpp |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | Rcpp |
| Enhances | igraph |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary | |
| macOS Binary (x86_64) | GOSim_1.41.1.tgz |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/GOSim |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GOSim |
| Package Short Url | https://bioconductor.org/packages/GOSim/ |
| Package Downloads Report | Download Stats |