DOI: 10.18129/B9.bioc.GISPA    

This is the development version of GISPA; for the stable release version, see GISPA.

GISPA: Method for Gene Integrated Set Profile Analysis

Bioconductor version: Development (3.8)

GISPA is a method intended for the researchers who are interested in defining gene sets with similar, a priori specified molecular profile. GISPA method has been previously published in Nucleic Acid Research (Kowalski et al., 2016; PMID: 26826710).

Author: Bhakti Dwivedi and Jeanne Kowalski

Maintainer: Bhakti Dwivedi <bhakti.dwivedi at>

Citation (from within R, enter citation("GISPA")):


To install this package, start R and enter:

if (!require("BiocManager"))
BiocManager::install("GISPA", version = "devel")


To view documentation for the version of this package installed in your system, start R and enter:



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biocViews GeneSetEnrichment, GenomeWideAssociation, Software, StatisticalMethod
Version 1.5.0
In Bioconductor since BioC 3.5 (R-3.4) (1 year)
License GPL-2
Depends R (>= 3.3.2)
Imports Biobase, changepoint, data.table, genefilter, graphics, GSEABase, HH, lattice, latticeExtra, plyr, scatterplot3d, stats
Suggests knitr
Depends On Me
Imports Me
Suggests Me
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Source Package GISPA_1.5.0.tar.gz
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Mac OS X 10.11 (El Capitan) GISPA_1.5.0.tgz
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