DBChIP

Differential Binding of Transcription Factor with ChIP-seq

Bioconductor version: Development (3.0)

DBChIP detects differentially bound sharp binding sites across multiple conditions, with or without matching control samples.

Author: Kun Liang

Maintainer: Kun Liang <kliang at stat.wisc.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("DBChIP")

To cite this package in a publication, start R and enter:

    citation("DBChIP")

Documentation

PDF R Script DBChIP
PDF   Reference Manual

Details

biocViews ChIPSeq, Genetics, Sequencing, Software, Transcription
Version 1.9.0
In Bioconductor since BioC 2.11 (R-2.15)
License GPL (>= 2)
Depends R (>= 2.15.0), edgeR, DESeq
Imports
Suggests ShortRead, BiocGenerics
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source DBChIP_1.9.0.tar.gz
Windows Binary DBChIP_1.9.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) DBChIP_1.9.0.tgz
Mac OS X 10.9 (Mavericks)
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