R package for calling CNV from Illumina 450k methylation microarrays

Bioconductor version: Development (3.0)

This package contains a set of functions that allow CNV calling from Illumina 450k methylation microarrays.

Author: Simon Papillon-Cavanagh, Jean-Philippe Fortin, Nicolas De Jay

Maintainer: Simon Papillon-Cavanagh <simon.papillon-cavanagh at>

To install this package, start R and enter:


Citation (from within R, enter citation("CopyNumber450k")):


PDF R Script CopyNumber450k User's Guide
PDF   Reference Manual


biocViews CopyNumberVariation, DNAMethylation, Microarray, Preprocessing, QualityControl, Software
Version 1.1.0
In Bioconductor since BioC 2.14 (R-3.1)
License Artistic-2.0
Depends Biobase, minfi, DNAcopy, preprocessCore, BiocGenerics
Imports methods
Suggests CopyNumber450kData, minfiData
System Requirements
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source CopyNumber450k_1.1.0.tar.gz
Windows Binary (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) CopyNumber450k_1.1.0.tgz
Mac OS X 10.9 (Mavericks) CopyNumber450k_1.1.0.tgz
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