To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("Clonality")

In most cases, you don't need to download the package archive at all.

Clonality

This is the development version of Clonality; for the stable release version, see Clonality.

Clonality testing

Bioconductor version: Development (3.0)

Statistical tests for clonality versus independence of tumors from the same patient based on their LOH or genomewide copy number profiles

Author: Irina Ostrovnaya

Maintainer: Irina Ostrovnaya <ostrovni at mskcc.org>

Citation (from within R, enter citation("Clonality")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("Clonality")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Clonality")

 

PDF R Script Clonality
PDF   Reference Manual

Details

biocViews Classification, CopyNumberVariation, Microarray, Software, aCGH
Version 1.13.0
In Bioconductor since BioC 2.8 (R-2.13)
License GPL-3
Depends R (>= 2.12.2), DNAcopy
Imports DNAcopy, grDevices, graphics, stats, utils
Suggests gdata, DNAcopy
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source Clonality_1.13.0.tar.gz
Windows Binary Clonality_1.13.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) Clonality_1.13.0.tgz
Mac OS X 10.9 (Mavericks) Clonality_1.13.0.tgz
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