CancerSubtypes

DOI: 10.18129/B9.bioc.CancerSubtypes    

This is the development version of CancerSubtypes; for the stable release version, see CancerSubtypes.

Cancer subtypes identification, validation and visualization based on multiple genomic data sets

Bioconductor version: Development (3.8)

CancerSubtypes integrates the current common computational biology methods for cancer subtypes identification and provides a standardized framework for cancer subtype analysis based multi-omics data, such as gene expression, miRNA expression, DNA methylation and others.

Author: Taosheng Xu<taosheng.x at gmail.com>, Thuc Le<Thuc.Le at unisa.edu.au>

Maintainer: Taosheng Xu<taosheng.x at gmail.com>

Citation (from within R, enter citation("CancerSubtypes")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly=TRUE))
    install.packages("BiocManager")
BiocManager::install("CancerSubtypes", version = "devel")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CancerSubtypes")

 

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Details

biocViews Clustering, GeneExpression, Software, Visualization
Version 1.7.0
In Bioconductor since BioC 3.4 (R-3.3) (2 years)
License GPL (>= 2)
Depends R (>= 3.4), sigclust, NMF
Imports SNFtool, iCluster, cluster, impute, limma, ConsensusClusterPlus, grDevices, survival
LinkingTo
Suggests BiocGenerics, RUnit, knitr, RTCGA.mRNA, RTCGA.clinical
SystemRequirements
Enhances
URL https://github.com/taoshengxu/CancerSubtypes
BugReports https://github.com/taoshengxu/CancerSubtypes/issues
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CancerSubtypes_1.7.0.tar.gz
Windows Binary CancerSubtypes_1.7.0.zip
Mac OS X 10.11 (El Capitan) CancerSubtypes_1.7.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/CancerSubtypes
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CancerSubtypes
Package Short Url http://bioconductor.org/packages/CancerSubtypes/
Package Downloads Report Download Stats

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