To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("BaseSpaceR")

In most cases, you don't need to download the package archive at all.

BaseSpaceR

This is the development version of BaseSpaceR; for the stable release version, see BaseSpaceR.

R SDK for BaseSpace RESTful API

Bioconductor version: Development (3.0)

A rich R interface to Illumina's BaseSpace cloud computing environment, enabling the fast development of data analysis and visualisation tools.

Author: Adrian Alexa

Maintainer: Adrian Alexa <aalexa at illumina.com>

To install this package, start R and enter:

Citation (from within R, enter citation("BaseSpaceR")):

Installation

source("http://bioconductor.org/biocLite.R")
biocLite("BaseSpaceR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BaseSpaceR")

 

PDF R Script BaseSpaceR
PDF   Reference Manual
Text   NEWS

Details

biocViews ConnectTools, DataImport, DataRepresentation, Genetics, HighThroughputSequencing, Infrastructure, Sequencing, Software
Version 1.9.0
In Bioconductor since BioC 2.12 (R-3.0)
License Apache License 2.0
Depends R (>= 2.15.0), RCurl, RJSONIO
Imports methods
Suggests RUnit, IRanges, Rsamtools
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source BaseSpaceR_1.9.0.tar.gz
Windows Binary BaseSpaceR_1.9.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) BaseSpaceR_1.9.0.tgz
Mac OS X 10.9 (Mavericks) BaseSpaceR_1.9.0.tgz
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