Autotuner

DOI: 10.18129/B9.bioc.Autotuner    

This is the development version of Autotuner; for the stable release version, see Autotuner.

Automated parameter selection for untargeted metabolomics data processing

Bioconductor version: Development (3.11)

This package is designed to help faciliate data processing in untargeted metabolomics. To do this, the algorithm contained within the package performs statistical inference on raw data to come up with the best set of parameters to process the raw data.

Author: Craig McLean

Maintainer: Craig McLean <craigmclean23 at gmail.com>

Citation (from within R, enter citation("Autotuner")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("Autotuner")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Autotuner")

 

HTML R Script Autotuner
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews MassSpectrometry, Metabolomics, Software
Version 1.1.0
In Bioconductor since BioC 3.10 (R-3.6) (< 6 months)
License MIT + file LICENSE
Depends R (>= 3.6)
Imports MSnbase, devtools, RColorBrewer, dplyr, rlang, plyr, mzR, assertthat, scales, methods, entropy, cluster, grDevices, graphics, stats, utils
LinkingTo
Suggests testthat (>= 2.1.0), covr, knitr, rmarkdown, mtbls2
SystemRequirements
Enhances
URL https://github.com/crmclean/Autotuner/
BugReports https://github.com/crmclean/Autotuner/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Autotuner_1.1.0.tar.gz
Windows Binary Autotuner_1.1.0.zip
Mac OS X 10.11 (El Capitan) Autotuner_1.1.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Autotuner
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Autotuner
Package Short Url https://bioconductor.org/packages/Autotuner/
Package Downloads Report Download Stats

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