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DelayedDataFrame

Delayed operation on DataFrame using standard DataFrame metaphor

Bioconductor version: 3.23 · Package version: 1.28.0

Based on the standard DataFrame metaphor, we are trying to implement the feature of delayed operation on the DelayedDataFrame, with a slot of lazyIndex, which saves the mapping indexes for each column of DelayedDataFrame. Methods like show, validity check, [/[[ subsetting, rbind/cbind are implemented for DelayedDataFrame to be operated around lazyIndex. The listData slot stays untouched until a realization call e.g., DataFrame constructor OR as.list() is invoked.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DelayedDataFrame")

Details

MaintainerQian Liu <Qian.Liu@roswellpark.org>
AuthorQian Liu [aut, cre], Hervé Pagès [aut], Martin Morgan [aut]
LicenseGPL-3
URLhttps://github.com/Bioconductor/DelayedDataFrame
Bug Reportshttps://github.com/Bioconductor/DelayedDataFrame/issues
Downloads rank317
Source branchRELEASE_3_23
biocViewsDataRepresentation, Infrastructure, Software

Documentation

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Dependencies

Depends: R (>= 3.6), S4Vectors (>= 0.23.19), DelayedArray (>= 0.7.5)

Imports: methods, stats, BiocGenerics

Suggests: testthat, knitr, rmarkdown, BiocStyle, SeqArray, GDSArray

Reverse dependencies

Imports Me (1): VariantExperiment