pwrEWAS

DOI: 10.18129/B9.bioc.pwrEWAS    

This is the development version of pwrEWAS; for the stable release version, see pwrEWAS.

A user-friendly tool for comprehensive power estimation for epigenome wide association studies (EWAS)

Bioconductor version: Development (3.11)

pwrEWAS is a user-friendly tool to assists researchers in the design and planning of EWAS to help circumvent under- and overpowered studies.

Author: Stefan Graw

Maintainer: Stefan Graw <shgraw at uams.edu>

Citation (from within R, enter citation("pwrEWAS")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("pwrEWAS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pwrEWAS")

 

PDF R Script pwrEWAS User's Guide
PDF   Reference Manual
Text   NEWS

Details

biocViews DNAMethylation, DifferentialMethylation, Microarray, Software, TissueMicroarray
Version 1.1.0
In Bioconductor since BioC 3.10 (R-3.6) (< 6 months)
License Artistic-2.0
Depends shinyBS, foreach
Imports doParallel, abind, truncnorm, CpGassoc, shiny, ggplot2, parallel, shinyWidgets, BiocManager, doSNOW, limma, genefilter, stats, grDevices, methods, utils, graphics, pwrEWAS.data
LinkingTo
Suggests knitr, RUnit, BiocGenerics, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package pwrEWAS_1.1.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) pwrEWAS_1.1.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/pwrEWAS
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/pwrEWAS
Package Short Url https://bioconductor.org/packages/pwrEWAS/
Package Downloads Report Download Stats

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