pandaR

DOI: 10.18129/B9.bioc.pandaR    

This is the development version of pandaR; for the stable release version, see pandaR.

PANDA Algorithm

Bioconductor version: Development (3.11)

Runs PANDA, an algorithm for discovering novel network structure by combining information from multiple complementary data sources.

Author: Dan Schlauch, Joseph N. Paulson, Albert Young, John Quackenbush, Kimberly Glass

Maintainer: Joseph N. Paulson <jpaulson at jimmy.harvard.edu>, Dan Schlauch <dschlauch at fas.harvard.edu>

Citation (from within R, enter citation("pandaR")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("pandaR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews GeneExpression, GeneRegulation, GraphAndNetwork, Microarray, Network, NetworkInference, Software, StatisticalMethod, Transcription
Version 1.19.0
In Bioconductor since BioC 3.1 (R-3.2) (4.5 years)
License GPL-2
Depends R (>= 3.0.0), methods, Biobase, BiocGenerics
Imports matrixStats, igraph, ggplot2, grid, reshape, plyr, RUnit, hexbin
LinkingTo
Suggests knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/pandaR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/pandaR
Package Short Url https://bioconductor.org/packages/pandaR/
Package Downloads Report Download Stats

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