microbiomeDASim

DOI: 10.18129/B9.bioc.microbiomeDASim    

This is the development version of microbiomeDASim; for the stable release version, see microbiomeDASim.

Microbiome Differential Abundance Simulation

Bioconductor version: Development (3.11)

A toolkit for simulating differential microbiome data designed for longitudinal analyses. Several functional forms may be specified for the mean trend. Observations are drawn from a multivariate normal model. The objective of this package is to be able to simulate data in order to accurately compare different longitudinal methods for differential abundance.

Author: Justin Williams, Hector Corrada Bravo, Jennifer Tom, Joseph Nathaniel Paulson

Maintainer: Justin Williams <williazo at ucla.edu>

Citation (from within R, enter citation("microbiomeDASim")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("microbiomeDASim")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("microbiomeDASim")

 

PDF R Script microbiomeDASim
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews Microbiome, Software, Visualization
Version 1.1.0
In Bioconductor since BioC 3.10 (R-3.6) (< 6 months)
License MIT + file LICENSE
Depends R (>= 3.6.0)
Imports graphics, ggplot2, MASS, tmvtnorm, Matrix, mvtnorm, pbapply, stats
LinkingTo
Suggests testthat (>= 2.1.0), knitr, devtools
SystemRequirements
Enhances
URL https://github.com/williazo/microbiomeDASim
BugReports https://github.com/williazo/microbiomeDASim/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package microbiomeDASim_1.1.0.tar.gz
Windows Binary microbiomeDASim_1.1.0.zip
Mac OS X 10.11 (El Capitan) microbiomeDASim_1.1.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/microbiomeDASim
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/microbiomeDASim
Package Short Url https://bioconductor.org/packages/microbiomeDASim/
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