manta

DOI: 10.18129/B9.bioc.manta    

This is the development version of manta; for the stable release version, see manta.

Microbial Assemblage Normalized Transcript Analysis

Bioconductor version: Development (3.11)

Tools for robust comparative metatranscriptomics.

Author: Ginger Armbrust, Adrian Marchetti

Maintainer: Chris Berthiaume <chrisbee at uw.edu>, Adrian Marchetti <amarchetti at unc.edu>

Citation (from within R, enter citation("manta")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("manta")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews DataImport, DifferentialExpression, GeneExpression, Genetics, ImmunoOncology, QualityControl, RNASeq, Sequencing, Software, Visualization
Version 1.33.0
In Bioconductor since BioC 2.10 (R-2.15) (7.5 years)
License Artistic-2.0
Depends R (>= 1.8.0), methods, edgeR(>= 2.5.13)
Imports Hmisc, caroline (>= 0.6.6)
LinkingTo
Suggests RSQLite, plotrix
SystemRequirements
Enhances
URL http://manta.ocean.washington.edu/
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/manta
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/manta
Package Short Url https://bioconductor.org/packages/manta/
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