gramm4R

DOI: 10.18129/B9.bioc.gramm4R    

This is the development version of gramm4R; for the stable release version, see gramm4R.

Generalized correlation analysis and model construction strategy for metabolome and microbiome

Bioconductor version: Development (3.11)

Generalized Correlation Analysis for Metabolome and Microbiome (GRaMM), for inter-correlation pairs discovery among metabolome and microbiome.

Author: Mengci Li, Dandan Liang, Tianlu Chen and Wei Jia

Maintainer: Tianlu Chen <chentianlu at sjtu.edu.cn>

Citation (from within R, enter citation("gramm4R")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("gramm4R")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gramm4R")

 

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Details

biocViews GraphAndNetwork, Microbiome, Software
Version 1.1.0
In Bioconductor since BioC 3.10 (R-3.6) (< 6 months)
License GPL-2
Depends R (>= 3.6.0)
Imports basicTrendline, investr, minerva, psych, grDevices, graphics, stats, DelayedArray, SummarizedExperiment, DMwR, phyloseq
LinkingTo
Suggests knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package gramm4R_1.1.0.tar.gz
Windows Binary gramm4R_1.1.0.zip
Mac OS X 10.11 (El Capitan) gramm4R_1.1.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/gramm4R
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/gramm4R
Package Short Url https://bioconductor.org/packages/gramm4R/
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