brainflowprobes

DOI: 10.18129/B9.bioc.brainflowprobes    

This is the development version of brainflowprobes; for the stable release version, see brainflowprobes.

Plots and annotation for choosing BrainFlow target probe sequence

Bioconductor version: Development (3.11)

Use these functions to characterize genomic regions for BrainFlow target probe design.

Author: Amanda Price [aut, cre] , Leonardo Collado-Torres [ctb]

Maintainer: Amanda Price <amanda.joy.price at gmail.com>

Citation (from within R, enter citation("brainflowprobes")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("brainflowprobes")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("brainflowprobes")

 

HTML R Script brainflowprobes users guide
PDF   Reference Manual
Text   NEWS

Details

biocViews Coverage, ExperimentalDesign, FlowCytometry, GeneTarget, Software, Transcriptomics, Visualization
Version 1.1.0
In Bioconductor since BioC 3.10 (R-3.6) (< 6 months)
License Artistic-2.0
Depends R (>= 3.6.0)
Imports Biostrings(>= 2.52.0), BSgenome.Hsapiens.UCSC.hg19(>= 1.4.0), bumphunter(>= 1.26.0), cowplot (>= 1.0.0), derfinder(>= 1.18.1), derfinderPlot(>= 1.18.1), GenomicRanges(>= 1.36.0), ggplot2 (>= 3.1.1), RColorBrewer (>= 1.1), utils, grDevices, GenomicState(>= 0.99.7)
LinkingTo
Suggests BiocStyle, knitcitations, knitr, rmarkdown, sessioninfo, testthat (>= 2.1.0)
SystemRequirements
Enhances
URL https://github.com/LieberInstitute/brainflowprobes
BugReports https://github.com/LieberInstitute/brainflowprobes/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package brainflowprobes_1.1.0.tar.gz
Windows Binary brainflowprobes_1.1.0.zip
Mac OS X 10.11 (El Capitan) brainflowprobes_1.1.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/brainflowprobes
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/brainflowprobes
Package Short Url https://bioconductor.org/packages/brainflowprobes/
Package Downloads Report Download Stats

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