bayNorm

DOI: 10.18129/B9.bioc.bayNorm    

This is the development version of bayNorm; for the stable release version, see bayNorm.

Single-cell RNA sequencing data normalization

Bioconductor version: Development (3.11)

bayNorm is used for normalizing single-cell RNA-seq data.

Author: Wenhao Tang [aut, cre], Fran<U+00E7>ois Bertaux [aut], Philipp Thomas [aut], Claire Stefanelli [aut], Malika Saint [aut], Samuel Marguerat [aut], Vahid Shahrezaei [aut]

Maintainer: Wenhao Tang <wt215 at ic.ac.uk>

Citation (from within R, enter citation("bayNorm")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("bayNorm")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("bayNorm")

 

HTML R Script Introduction to bayNorm
PDF   Reference Manual
Text   NEWS

Details

biocViews ImmunoOncology, Normalization, RNASeq, Sequencing, SingleCell, Software
Version 1.5.2
In Bioconductor since BioC 3.8 (R-3.5) (1 year)
License GPL (>= 2)
Depends R (>= 3.5)
Imports Rcpp (>= 0.12.12), BB, foreach, iterators, doSNOW, parallel, MASS, locfit, fitdistrplus, stats, methods, graphics, grDevices, SingleCellExperiment, SummarizedExperiment, BiocParallel, utils
LinkingTo Rcpp, RcppArmadillo, RcppProgress
Suggests knitr, rmarkdown, BiocStyle, devtools, testthat
SystemRequirements
Enhances
URL https://github.com/WT215/bayNorm
BugReports https://github.com/WT215/bayNorm/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package bayNorm_1.5.2.tar.gz
Windows Binary bayNorm_1.5.2.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) bayNorm_1.5.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/bayNorm
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/bayNorm
Package Short Url https://bioconductor.org/packages/bayNorm/
Package Downloads Report Download Stats

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