TreeSummarizedExperiment

DOI: 10.18129/B9.bioc.TreeSummarizedExperiment    

This is the development version of TreeSummarizedExperiment; for the stable release version, see TreeSummarizedExperiment.

TreeSummarizedExperiment: a S4 Class for Data with Tree Structures

Bioconductor version: Development (3.11)

TreeSummarizedExperiment has extended SingleCellExperiment to include hierarchical information on the rows or columns of the rectangular data.

Author: Ruizhu Huang [aut, cre]

Maintainer: Ruizhu Huang <ruizhuRH at gmail.com>

Citation (from within R, enter citation("TreeSummarizedExperiment")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("TreeSummarizedExperiment")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TreeSummarizedExperiment")

 

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Details

biocViews DataRepresentation, Infrastructure, Software
Version 1.3.0
In Bioconductor since BioC 3.9 (R-3.6) (0.5 years)
License GPL (>=2)
Depends R (>= 3.6.0), SingleCellExperiment, S4Vectors(>= 0.23.18)
Imports methods, utils, ape, dplyr, SummarizedExperiment
LinkingTo
Suggests ggtree, BiocStyle, knitr, rmarkdown, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TreeSummarizedExperiment_1.3.0.tar.gz
Windows Binary TreeSummarizedExperiment_1.3.0.zip
Mac OS X 10.11 (El Capitan) TreeSummarizedExperiment_1.3.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/TreeSummarizedExperiment
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TreeSummarizedExperiment
Package Short Url https://bioconductor.org/packages/TreeSummarizedExperiment/
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