TarSeqQC

DOI: 10.18129/B9.bioc.TarSeqQC    

This is the development version of TarSeqQC; for the stable release version, see TarSeqQC.

TARgeted SEQuencing Experiment Quality Control

Bioconductor version: Development (3.11)

The package allows the representation of targeted experiment in R. This is based on current packages and incorporates functions to do a quality control over this kind of experiments and a fast exploration of the sequenced regions. An xlsx file is generated as output.

Author: Gabriela A. Merino, Cristobal Fresno, Yanina Murua, Andrea S. Llera and Elmer A. Fernandez

Maintainer: Gabriela Merino <merino.gabriela33 at gmail.com>

Citation (from within R, enter citation("TarSeqQC")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("TarSeqQC")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews Alignment, Coverage, DataImport, QualityControl, Sequencing, Software, TargetedResequencing, Visualization
Version 1.17.0
In Bioconductor since BioC 3.2 (R-3.2) (4 years)
License GPL (>=2)
Depends R (>= 3.5.1), methods, GenomicRanges, Rsamtools(>= 1.9.2), ggplot2, plyr, openxlsx
Imports grDevices, stats, utils, S4Vectors, IRanges, BiocGenerics, reshape2, GenomeInfoDb, BiocParallel, Biostrings, cowplot, graphics, GenomicAlignments, Hmisc
LinkingTo
Suggests BiocManager, RUnit
SystemRequirements
Enhances
URL http://www.bdmg.com.ar
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/TarSeqQC
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TarSeqQC
Package Short Url https://bioconductor.org/packages/TarSeqQC/
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