TPP2D

DOI: 10.18129/B9.bioc.TPP2D    

This is the development version of TPP2D; for the stable release version, see TPP2D.

FDR-controlled analysis of 2D-TPP experiments

Bioconductor version: Development (3.11)

FDR-controlled analysis of 2D-TPP experiments by functional analysis of dose-response curves across temperatures.

Author: Nils Kurzawa [aut, cre], Holger Franken [aut], Simon Anders [aut], Wolfgang Huber [aut], Mikhail M. Savitski [aut]

Maintainer: Nils Kurzawa <nils.kurzawa at embl.de>

Citation (from within R, enter citation("TPP2D")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("TPP2D")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TPP2D")

 

HTML R Script Introduction to TPP2D for 2D-TPP analysis
PDF   Reference Manual
Text   NEWS

Details

biocViews DataImport, Proteomics, Software
Version 1.3.0
In Bioconductor since BioC 3.9 (R-3.6) (0.5 years)
License GPL-3
Depends R (>= 3.6.0), stats, utils, dplyr, methods
Imports ggplot2, tidyr, foreach, doParallel, openxlsx, stringr, RCurl, parallel, MASS
LinkingTo
Suggests knitr, testthat
SystemRequirements
Enhances
URL http://bioconductor.org/packages/TPP2D
BugReports https://support.bioconductor.org/
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TPP2D_1.3.0.tar.gz
Windows Binary TPP2D_1.3.0.zip
Mac OS X 10.11 (El Capitan) TPP2D_1.3.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/TPP2D
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TPP2D
Package Short Url https://bioconductor.org/packages/TPP2D/
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