OmnipathR

DOI: 10.18129/B9.bioc.OmnipathR    

This is the development version of OmnipathR; for the stable release version, see OmnipathR.

Import Omnipath network

Bioconductor version: Development (3.11)

Import data from https://www.omnipathdb.org webservice. It also includes functions to transform and print this data.

Author: Attila Gabor, Denes Turei, Alberto Valdeolivas

Maintainer: Alberto Valdeolivas Urbelz <alvaldeolivas at gmail.com>

Citation (from within R, enter citation("OmnipathR")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("OmnipathR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("OmnipathR")

 

PDF R Script OmnipathR: utility functions to work with Omnipath in R
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews DataImport, DataRepresentation, GraphAndNetwork, Network, Pathways, Software, ThirdPartyClient
Version 1.1.1
In Bioconductor since BioC 3.10 (R-3.6) (< 6 months)
License MIT + file LICENSE
Depends igraph, graphics, methods, utils
Imports dplyr, rlang
LinkingTo
Suggests tidyr, dnet, gprofiler2, BiocStyle, testthat
SystemRequirements
Enhances
URL https://github.com/saezlab/OmnipathR
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package OmnipathR_1.1.1.tar.gz
Windows Binary OmnipathR_1.1.0.zip
Mac OS X 10.11 (El Capitan) OmnipathR_1.1.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/OmnipathR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/OmnipathR
Package Short Url https://bioconductor.org/packages/OmnipathR/
Package Downloads Report Download Stats

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