MBQN

DOI: 10.18129/B9.bioc.MBQN    

This is the development version of MBQN; for the stable release version, see MBQN.

Mean/Median-balanced quantile normalization

Bioconductor version: Development (3.11)

Modified quantile normalization for omics or other matrix-like data distorted in location and scale.

Author: Ariane Schad [aut, cre] , Clemens Kreutz [aut, ctb] , Eva Brombacher [aut, ctb]

Maintainer: Ariane Schad <ariane.schad at fdm.uni-freiburg.de>

Citation (from within R, enter citation("MBQN")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MBQN")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MBQN")

 

HTML R Script MBQN Package
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews Normalization, Preprocessing, Proteomics, Software
Version 1.1.2
In Bioconductor since BioC 3.10 (R-3.6) (< 6 months)
License GPL-3 + file LICENSE
Depends R (>= 3.6)
Imports stats, graphics, utils, limma(>= 3.30.13), SummarizedExperiment(>= 1.10.0), preprocessCore(>= 1.36.0), BiocFileCache, rappdirs, rpx, xml2, RCurl
LinkingTo
Suggests knitr
SystemRequirements
Enhances
URL https://github.com/arianeschad/mbqn
BugReports https://github.com/arianeschad/MBQN/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MBQN_1.1.2.tar.gz
Windows Binary MBQN_1.1.2.zip
Mac OS X 10.11 (El Capitan) MBQN_1.1.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/MBQN
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MBQN
Package Short Url https://bioconductor.org/packages/MBQN/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: