ENCODExplorer

DOI: 10.18129/B9.bioc.ENCODExplorer    

This is the development version of ENCODExplorer; for the stable release version, see ENCODExplorer.

A compilation of ENCODE metadata

Bioconductor version: Development (3.11)

This package allows user to quickly access ENCODE project files metadata and give access to helper functions to query the ENCODE rest api, download ENCODE datasets and save the database in SQLite format.

Author: Charles Joly Beauparlant [aut, cre], Audrey Lemacon [aut], Eric Fournier [aut], Louis Gendron [ctb], Astrid-Louise Deschenes [ctb], Arnaud Droit [aut]

Maintainer: Charles Joly Beauparlant <charles.joly-beauparlant at crchul.ulaval.ca>

Citation (from within R, enter citation("ENCODExplorer")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ENCODExplorer")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ENCODExplorer")

 

HTML R Script ENCODExplorer
PDF   Reference Manual
Text   NEWS

Details

biocViews DataImport, Infrastructure, Software
Version 2.13.0
In Bioconductor since BioC 3.1 (R-3.2) (4.5 years)
License Artistic-2.0
Depends R (>= 3.6)
Imports methods, tools, jsonlite, RCurl, tidyr, data.table, dplyr, stringr, stringi, utils, AnnotationHub, GenomicRanges, rtracklayer, S4Vectors, GenomeInfoDb
LinkingTo
Suggests RUnit, BiocGenerics, knitr, curl, httr, shiny, shinythemes, DT
SystemRequirements
Enhances
URL
BugReports https://github.com/CharlesJB/ENCODExplorer/issues
Depends On Me
Imports Me
Suggests Me TSRchitect
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ENCODExplorer_2.13.0.tar.gz
Windows Binary ENCODExplorer_2.13.0.zip
Mac OS X 10.11 (El Capitan) ENCODExplorer_2.13.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ENCODExplorer
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ENCODExplorer
Package Short Url https://bioconductor.org/packages/ENCODExplorer/
Package Downloads Report Download Stats

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