BiocSet

DOI: 10.18129/B9.bioc.BiocSet    

This is the development version of BiocSet; for the stable release version, see BiocSet.

Representing Different Biological Sets

Bioconductor version: Development (3.11)

BiocSet displays different biological sets in a triple tibble format. These three tibbles are `element`, `set`, and `elementset`. The user has the abilty to activate one of these three tibbles to perform common functions from the dplyr package. Mapping functionality and accessing web references for elements/sets are also available in BiocSet.

Author: Kayla Morrell [aut, cre], Martin Morgan [aut], Kevin Rue-Albrecht [ctb], LluĂ­s Revilla Sancho [ctb]

Maintainer: Kayla Morrell <kayla.morrell at roswellpark.org>

Citation (from within R, enter citation("BiocSet")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("BiocSet")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BiocSet")

 

HTML R Script BiocSet: Representing Element Sets in the Tidyverse
PDF   Reference Manual
Text   NEWS

Details

biocViews GO, GeneExpression, KEGG, Software
Version 1.1.1
In Bioconductor since BioC 3.10 (R-3.6) (< 6 months)
License Artistic-2.0
Depends R (>= 3.6), dplyr
Imports methods, tibble, utils, rlang, plyr, rtracklayer, AnnotationDbi, KEGGREST
LinkingTo
Suggests GSEABase, airway, org.Hs.eg.db, DESeq2, limma, BiocFileCache, GO.db, testthat, knitr, rmarkdown, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BiocSet_1.1.1.tar.gz
Windows Binary BiocSet_1.1.1.zip
Mac OS X 10.11 (El Capitan) BiocSet_1.1.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/BiocSet
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BiocSet
Package Short Url https://bioconductor.org/packages/BiocSet/
Package Downloads Report Download Stats

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